Alphabetical List of Software
a5_pipeline
abyss
amber
amos
ansys
ant
arpack
atlas
autodock
autodock_vina
bazel
bbcp
beagle_lib
beast
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
bioperl
blast
blat
boost
bowtie
bowtie2
bwa
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
cp2k
cpmd
cuda
cufflinks
ddt
dendropy
easybuild
eigen
espresso
exabayes
expat
fastx_toolkit
fftw
gamess
garli
gate
gateway-usage-reporting
gaussian
gaussview
gcc
geant4
globus
gnuparallel
gnuplot
gromacs
gsl
gx-map
hdf5
hmmer
hpx
hwloc
hypre
idba
idba_ud
ima2p
impi
intel
java
jdk
jellyfish
lammps
lapack
last
libgtextutils
lsuhpctools
lucy
mafft
magma
mathematica
matlab
mauve
mcnpx
mercurial
metis
migrate
mira
mothur
mpich
mrbayes
mummer
mumps
muscle
mvapich2
namd
ncbiblast
netcdf
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
pacman
parallel_netcdf
paraview
parmetis
paup
pcre
perl
petsc
pgi
pigz
poretools
portland
python
qiime
quake
r
racon
raxml
ray
remora
repet
rnnotator
root
ruby
rum
samtools
scalapack
siesta
sina
soapdenovo
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
structure
subversion
swift
szip
tapir
tau
tginfo
tgusage
tophat
totalview
trinity
t_coffee
uberftp
unicore
upc
valgrind
vcftools
velvet
visit
vmatch
vmd
vtune
wannier90
wien2k
wq
xdinfo
xdresourceid
xdusage
xsede
The information in this database may not reflect all software available on HPC systems. If you do not see an application that you wish to use, or if you have questions about software that is currently available, please contact the HPC Help Desk.
Software Listing by Type
admin
application
application/bioinformatics
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
dendropy
tapir
vcftools
application/biology
application/cfd
application/chemistry
application/debugging
application/impi
application/math
application/md
application/others
application/physics
application/profiling
application/tools
application/version control
application/visualization
apps
a5_pipeline
abyss
amber
amos
ansys
bazel
bbcp
beagle_lib
beast
bioperl
blast
blat
boost
bowtie
bowtie2
bwa
caffe
canu
cap3
cd-hit
clonalframe
clonalorigin
cmake
cuda
cufflinks
ddt
dendropy
eigen
espresso
expat
fastx_toolkit
fftw
garli
gaussian
gcc
geant4
gnuparallel
gromacs
gsl
hdf5
hmmer
hpx
hwloc
hypre
idba
idba_ud
ima2p
impi
intel
java
jellyfish
lammps
lapack
last
libgtextutils
lucy
mafft
mathematica
matlab
mauve
mercurial
metis
mira
mothur
mpich
mrbayes
mummer
mumps
muscle
mvapich2
namd
netcdf
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
paraview
parmetis
paup
pcre
perl
petsc
pgi
pigz
poretools
python
qiime
quake
r
racon
raxml
ray
remora
repet
rnnotator
root
rum
samtools
scalapack
siesta
sina
soapdenovo
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
structure
subversion
swift
szip
tau
tophat
totalview
trinity
t_coffee
valgrind
velvet
visit
vmatch
vmd
vtune
wq
library
library/io
library/math
library/mpi
lsuhpctools
programming/compiler
programming/languages
xsede
ant
gateway-usage-reporting
globus
gx-map
java
pacman
perl
tginfo
tgusage
uberftp
unicore
xdinfo
xdresourceid
xdusage
xsede
Software Listing by Cluster
Philip
a5_pipeline
abyss
amos
ansys
bbcp
beagle_lib
beast
blast
boost
bowtie
bowtie2
cap3
cd-hit
clonalframe
clonalorigin
cmake
cufflinks
ddt
dendropy
easybuild
eigen
expat
fastx_toolkit
fftw
gcc
gsl
hdf5
hmmer
idba_ud
intel
jellyfish
last
libgtextutils
lucy
mafft
mathematica
matlab
mauve
mercurial
metis
mira
mothur
mpich
mrbayes
mummer
muscle
netcdf
oases
octave
parmetis
pcre
perl
python
qiime
quake
r
raxml
repet
rum
samtools
sina
soapdenovo2
soapdenovotrans
sparsehash
sspace
szip
tophat
trinity
t_coffee
valgrind
velvet
vmatch
Qb2
amber
bazel
bbcp
beagle_lib
beast
bioperl
blast
boost
bowtie
bowtie2
bwa
caffe
canu
cmake
cuda
cufflinks
ddt
easybuild
espresso
fastx_toolkit
fftw
garli
gaussian
gcc
geant4
gnuparallel
gromacs
gsl
hdf5
hmmer
hypre
idba
ima2p
impi
intel
java
lammps
lapack
libgtextutils
mafft
matlab
mauve
mercurial
metis
mira
mothur
mpich
mrbayes
mummer
mumps
muscle
mvapich2
namd
netcdf
netcdf_fortran
novoplasty
nwchem
oases
openbabel
openfoam
openmpi
paraview
parmetis
paup
perl
petsc
pgi
pigz
poretools
python
qiime
r
racon
raxml
remora
root
rum
samtools
scalapack
soapdenovo
soapdenovo_trans
spades
sparsehash
stacks
stampy
structure
subversion
szip
tau
tophat
totalview
trinity
valgrind
velvet
visit
vmatch
vmd
wq
Smic
abyss
amber
amos
ansys
ant
bbcp
beast
blast
blat
boost
bowtie
bowtie2
bwa
cmake
cuda
cufflinks
ddt
easybuild
espresso
expat
fftw
gateway-usage-reporting
gaussian
gcc
globus
gnuparallel
gromacs
gsl
gx-map
hdf5
hmmer
hpx
hwloc
hypre
idba
impi
intel
java
lammps
lapack
mathematica
matlab
mauve
mercurial
metis
mira
mpich
mummer
mumps
muscle
mvapich2
namd
netcdf
netcdf_fortran
nwchem
oases
octave
openfoam
openmpi
pacman
paraview
parmetis
pcre
perl
petsc
pgi
pigz
python
r
ray
remora
rnnotator
rum
samtools
scalapack
siesta
soapdenovo
soapdenovo_trans
sparsehash
sprng
swift
szip
tau
tginfo
tgusage
tophat
totalview
uberftp
unicore
valgrind
velvet
vmatch
vtune
wq
xdinfo
xdresourceid
xdusage
xsede
Supermike2
amber
ansys
arpack
atlas
autodock
autodock_vina
bbcp
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
boost
clhep
cmake
cmg
cp2k
cpmd
ddt
dendropy
espresso
exabayes
fftw
gamess
gate
gaussian
gaussview
gcc
geant4
gnuparallel
gnuplot
gromacs
gsl
hdf5
hypre
impi
intel
jdk
lammps
lapack
lsuhpctools
magma
mathematica
matlab
mcnpx
metis
migrate
mpich
mrbayes
mvapich2
namd
ncbiblast
netcdf
nwchem
octave
openfoam
openmpi
parallel_netcdf
paraview
parmetis
perl
petsc
pigz
portland
python
r
remora
root
ruby
scalapack
sprng
subversion
swift
tapir
tau
totalview
upc
valgrind
vcftools
visit
wannier90
wien2k
wq